Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs9587028 chr13:106589516 A/G 7.73E-5 118 38.58 54.9 28.43 KM Plot
THYM rs9608163 chr22:23928891 C/T 1.51E-6 115 48 27.1 22.17 KM Plot
THYM rs961980 chr8:50175975 A/G 2.31E-10 119 25.83 50.82 46.07 KM Plot
THYM rs9632920 chr9:97176100 C/T 7.78E-5 119 41.77 40.43 17.03 KM Plot
THYM rs968660 chr5:72768166 C/T 8.17E-7 115 42.9 46.43 8.52 KM Plot
THYM rs9788969 chr16:88812250 A/G 0.00014 119 33.78 38.83 60.13 KM Plot
THYM rs9795280 chr11:125583008 G/A 0.000188 119 44.38 35.67 23.42 KM Plot
THYM rs9795427 chr11:125581800 T/C 0.000188 119 44.38 35.67 23.42 KM Plot
THYM rs9795472 chr11:125582340 T/A 0.000188 119 44.38 35.67 23.42 KM Plot
THYM rs9820175 chr3:142808781 T/C 7.55E-5 115 49.6 38.83 41.77 KM Plot
THYM rs9831162 chr3:142813964 A/C 5.99E-5 119 41.22 37.62 49.6 KM Plot
THYM rs9844248 chr3:118922183 G/A 1.0E-12 117 45.87 33.85 3.83 KM Plot
THYM rs9857824 chr3:40459412 A/G 0.000314 119 38.33 30.55 53.03 KM Plot
THYM rs9875210 chr3:142808555 C/G 7.55E-5 115 49.6 38.83 41.77 KM Plot
THYM rs9960670 chr18:33577712 A/G 0.000228 118 49.4 35 51.23 KM Plot